Installation

Installation can be done in two different ways

Environment Creation

If you don’t have any Python environment, you can create a conda environment by

conda create --name domhmm
conda activate domhmm

Tip

conda create command creates a conda environment named domhmm and conda activate command starts environment in your terminal. Whenever you close your terminal, you need to use activate command again to restart environment.

Installation with PyPI

For installation, you can directly use pip in project directory.

pip install domhmm

Installation for Development

This type of installation can be use when pip is not usable, change in source code or contributing DomHMM.

Clone DomHMM’s repository and change directory to project directory

git clone https://github.com/BioMemPhys-FAU/domhmm
cd domhmm

Install dependencies and DomHMM’s current version via pip command

pip install -e .

Check out the How to Run DomHMM section as next step.